Sunday, January 31, 2010

Performance Feedback Revision - a peer-reviewed hip-hop definition of Evolution!

Last year, we enjoyed Baba Brinkman's performance of The Rap Guide to Evolution on our campus when he was in Fresno for the Rogue Festival. His show has gone on to a larger world stage since, as you can see in the above video, from the Hammersmith Apollo in the UK. He was there as a part of Nerdstock: Nine Lessons and Carols for Godless People, which was recently broadcast on television by the BBC! You can watch the whole show on YouTube (if you're outside the UK and therefore not able to use BBC's iPlayer). I thought I should share Performance, Feedback, Revision here for my students since I am going over the basic conceptual framework of evolution in several classes these days - and Brinkman provides a fun restatement of some of the concepts, in rap (and peer-reviewd rap, no less!)! If you haven't done so yet, you really ought to go listen to the whole rap album, available via his website.

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Iron in the oceans and past climate change - @ Valley Café Sci this Monday night!

Central Valley Café Scientifique presents:

The Role of Iron Fertilization and Past Climate Change: Where Does All That Dirt Come From?
by
Dr. Jennifer Latimer
Indiana State University & Consortium for Ocean Leadership

At Lucy’s Lair on Maple and Behymer
Monday, February 1, 2010, 6:30-8:30 PM

Do join us, if you can, for some fine Ethiopian fare with a hearty helping of marine science!

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Procrastination is... watching videos about procrastrination

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Americans bringing democracy to the Iraqis is like Columbus bringing Christianity to the Indians

The Daily Show paid tribute to Howard Zinn this week in their "moment of zen" segment which had a clip from his 2005 interview. You can see that interview in its entirety above.

And note that in both respects - paying tribute to Zinn, and interviewing him in the first place, the Daily Show has (once again) surpassed even the so-called "liberal" National Public Radio (NPR) which, in their segment on Zinn's passing, somehow felt compelled to bring in a rightwing crank to "critique"/diss Zinn! What would we do for decent news coverage in the mainstream media in this country if not for comedians like Jon Stewart and Stephen Colbert, and the soon to retire Bill Moyers? Enjoy that narcotic while you can...

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Saturday, January 30, 2010

The iPad's future shock, and the puzzling reactions of the technorati

The following article comes close to my feelings watching the tech world and many of my friends go bonkers over Apple's announcement of the iPad this week. Will I get one myself - maybe not the first generation, but sure, I can see plenty of uses for a device like this. And I speak as someone who's been using an iPhone for a few months and am really impressed at how intuitive and easy to use that device is - even to my 4-yr-old. Will it replace my desktop/laptop computers? Probably not. But really, for most of what I use my laptop for on a daily basis - email, reading papers, web browsing, writing, making and presenting lectures, even field data collection - I can easily see an iPad being perfectly adequate for most of this. Personally, I'd like to wait and see how it all plays out rather than pass judgment - but I suspect this article is closer to the mark than much of the ranting I've read elsewhere. Oh, and the name iPad doesn't bother me any more than having to use a notePad bothers me in daily life - so I wonder why folks who might find the idea of a bachelor Pad exciting are upset about this moniker! Its just odd. But read this, especially if you share those misgivings:


I can't help being struck by the volume and vehemence of apparently technologically sophisticated people inveighing against the iPad.

Some are trying to dismiss these ravings by comparing them to certain comments made after the launch of the iPod in 2001: "No wireless. Less space than a Nomad. Lame." I fear this January-26th thinking misses the point.

What you're seeing in the industry's reaction to the iPad is nothing less than future shock.

For years we've all held to the belief that computing had to be made simpler for the "average person." I find it difficult to come to any conclusion other than that we have totally failed in this effort.

Secretly, I suspect, we technologists quite liked the idea that Normals would be dependent on us for our technological shamanism. Those incantations that only we can perform to heal their computers, those oracular proclamations that we make over the future and the blessings we bestow on purchasing choices.

Ask yourself this: in what other walk of life do grown adults depend on other people to help them buy something? Women often turn to men to help them purchase a car but that's because of the obnoxious misogyny of car dealers, not because ladies worry that the car they buy won't work on their local roads. (Sorry computer/car analogy. My bad.)

I'm often saddened by the infantilizing effect of high technology on adults. From being in control of their world, they're thrust back to a childish, medieval world in which gremlins appear to torment them and disappear at will and against which magic, spells, and the local witch doctor are their only refuges.

If the iPad pushes us even a little bit further in this direction - towards making technology more accessible and easier to use for most folks (and eventually cheaper/affordable as well), then what's not to like? As a friend commented on a Facebook thread, the real promise of technology can only be realized if it can be democratized, and made available to as many people as possible, and if it breaks up the monopoly of elites on information. Seems to me, as the above article suggests, that Apple's approach to the OS may finally be breaking the monopoly of the OS-congnoscenti elite! And that can't be all bad.

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Portraits of Mt Shasta

Taken from a stop along I-5 a few weeks ago when we drove through the area. Images captured with a Nikon D70 SLR with Nikkor 300mm F4 lens, handheld.

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Conversations with History: Howard Zinn

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Now that's one fairly odd parent...

via telegraph.co.uk

Three piglets rests next to their adoptive mother, Sai Mai, an eight-year-old tiger, at the Sriracha Tiger Zoo in Thailand's Chonburi Province

What an incongrously touching image! And I wonder whoever thought of making this happen! What became of the piglet's biological mother? More importantly (in the larger rarity scale of things), what became of the tigress' cubs? She's surely had some recently if she's able to nurse...

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Friday, January 29, 2010

Seminar today: Step-by-step evolution of the vertebrate blood coagulation system

Friday, January 29, 2010

3:00-4:00 PM in Science II, Room 109


Professor,

Dept. of Chemistry & Biochemistry and Molecular Biology

University of California, San Diego

La Jolla, CA

The availability of whole genome sequences for a variety of vertebrates is making it possible to reconstruct the step-by-step evolution of complex phenomena like blood coagulation, an event that in mammals involves the interplay of more than two dozen genetically encoded factors. Gene inventories for different organisms are revealing when during vertebrate evolution certain factors first made their appearance or, on occasion, disappeared from some lineages. The whole genome sequence databases of two protochordates and seven non-mammalian vertebrates were examined in search of some 20 genes known to be associated with blood clotting in mammals. No genuine orthologs were found in the protochordate genomes (sea squirt and amphioxus). As for vertebrates, although the jawless fish have genes for generating the thrombin-catalyzed conversion of fibrinogen to fibrin, they lack several clotting factors, including two thought to be essential for the activation of thrombin in mammals. Fish in general lack genes for the “contact factor” proteases, the predecessor forms of which make their first appearance in tetrapods. The full complement of factors known to be operating in humans doesn’t occur until pouched marsupials (opossum), at least one key factor still being absent in egg-laying mammals like the platypus.

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Thursday, January 28, 2010

Two denialists walk into a bar...

... and one of them comes off looking like a champion of science going by this quote highlighted by Al Gore:

“I have a choice of believing the 98 percent or the 2 percent,” Kennedy said. “If you believe my 98 percent and we go ahead and try to reduce our carbon, we’ve gotten rid of the dirty fuel, we’ve made ourselves energy independent, improved our national security, improved our prosperity and quality of life and health for American citizens. If we believe Mr. Blankenship and his 2 percent, and they’re wrong, the whole of civilization is destroyed.”

Nice quote and sentiment I have no quarrel with. Yet I can't help but wonder why Mr. Kennedy cannot apply the same criteria towards the science on the risks of vaccines? For there, on the issue of the connection between vaccines and autism in particular, there is probably an even stronger than 98% consensus among scientists that there is no link - yet Kennedy is a leading denialist of that science! What gives? Why this selective rationalism?

Nevertheless, Kennedy is on the right (left) side on the issues of mountaintop removal, alternative energy, and global warming - while Blankenship says some really astonishing (to me anyway) things highlighting his ignorant denialism. If the above edited excerpts have whetted your appetite, you can see the entire debate on YouTube (parts 1, 2, and 3.

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What the Classroom Didn't Teach Me about the American Empire - Howard Zinn

Empire or Humanity?
What the Classroom Didn't Teach Me about the American Empire
by Howard Zinn
Narrated by Viggo Mortensen
Art by Mike Konopacki
Video editing by Eric Wold

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A People's History of the United States - read it and add your own voice

1. Columbus, The Indians, and Human Progress

2. Drawing the Color Line

3. Persons of Mean and Vile Condition

4. Tyranny is Tyranny

5. A Kind of Revolution

6. The Intimately Oppressed

7. As Long As Grass Grows Or Water Runs

8. We Take Nothing by Conquest, Thank God

9. Slavery Without Submission, Emancipation Without Freedom

10. The Other Civil War

11. Robber Barons And Rebels

12. The Empire and the People

13. The Socialist Challenge

14. War Is the Health of the State

15. Self-help in Hard Times

16. A People's War?

17. "Or Does It Explode?"

18. The Impossible Victory: Vietnam

19. Surprises

20. The Seventies: Under Control?

21. Carter-Reagan-Bush: The Bipartisan Consensus

22. The Unreported Resistance

23. The Clinton Presidency and the Crisis of Democracy

24. The Coming Revolt of the Guards

24. The 2000 Election and the "War on Terrorism"

You have this book on your shelf already, heavily dogeared and annotated, don't you? No? If not, you better get a start on this real history of this nation, not the imperial history sanctioned in the formal textbooks! Thanks to the History is a Weapon website, you can also read the entire text online via the above links, but you're better off getting an actual copy (or several to share!). Read it and weep, for the voice we have lost today with the passing of Howard Zinn. Read it and raise your own voice and follow his path, for he showed us how not to let the victors in history silence the rest of us!

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Howard Zinn: a tribute from Democracy Now





From this morning's Democracy Now by Amy Goodman with Noam Chomsky, Alice Walker, Naomi Klein and Anthony Arnove



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Wednesday, January 27, 2010

Genie Scott on Evolution Versus Creationism

This is the second lecture of the course on Darwin's Legacy offered at Stanford in 2008. I posted the first lecture earlier today.

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Darwin's Legacy: introduction to a course from Stanford University

On NCSE's Facebook page this morning I discovered a link to this wonderful series of lectures on Darwin's Legacy put together as a continuing education course by Stanford University in fall 2008. I will post the whole series here, since it has recently become available online. Or you can get a jump start and go to the source: watch the whole thing in YouTube videos like the one above on Academic Earth or download it to your favorite portable device by downloading it from iTunes U.

While we don't have Stanford's resources or reach, as you may know, we are nevertheless also hosting our own modest Evolutionary Biology Lecture Series under the umbrella of the Consortium for Evolutionary Studies at California State University, Fresno this year. And as some of you may remember, we had NCSE's Dr. Eugenie Scott speaking on campus last month; she's also featured as the second talk in the Stanford course. This friday we'll learn about the evolution of the vertebrate blood coagulation system from Dr. Russell Doolittle of UC San Diego. Join us if you can, or come back here for videos/podcasts - I will try to record and post as many as I can.

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NOVA | Darwin's Darkest Hour

While the big cinema treatment of Darwin's great pause in publishing "On the Origin of Species" may never make it down to theatres in our neck of the woods, out here in California's Central Valley (not a big market for stories about Darwin, it seems!), the above version on PBS' Nova was actually quite compelling. Having read some mixed reviews of Creation (although most reviews have been positive), I wonder if this televisual treatment may actually be superior in capturing the remarkable intellectual ferment behind Darwin's work. Rather than the movie's dramatic emphasis (from what I've read) on the emotional drama of Darwin's life after the death of little Annie, this Nova biopic choses to focus more on the intellectual turmoil (without downplaying the emotional turmoil at all), and even has Charles and Emma going back and forth in a very compelling way as he develops his arguments. If you're fortunate to be living in a place where Creation was released in theatres (or have managed to score a copy to view somehow), I'd love to know what you think: how does this compare?

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Tuesday, January 26, 2010

Step-by-Step Evolution of Vertebrate Blood Coagulation

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Friday, January 22, 2010

Brain Matters | The Human Spark | PBS Video

The final, and perhaps the most fascinating, part of the series anchored by Alan Alda. Go to the show's website for a lot more information and supporting material.

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Wednesday, January 20, 2010

Memo to my students: I will get it done ASAP!

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Tuesday, January 19, 2010

Coal Comfort, or why you must toss those 3D goggles aside and return home from Pandora


Its not often that one sees a paper in Science becoming grist for the late-night comedy talk show mill! So this is yet another reason to salute Stephen Colbert, who already offers the most science coverage of any such popular show, and treasure him for the precious resource he is. And I especially loved how he left the very distinguished ecologist Dr. Margaret Palmer floundering in helpless (and retort-less) laughter last night!

But, once you stop laughing, you should check out the Palmer et al paper - and then do something to hold the Obama EPA's feet to the (non-coal) fire on this issue. Mountaintop removal, like dragnet/bottom trawling fishing—or ocean bottom removal, if you will—is a barbaric practice, especially in this day and age when we are so proud of our precision in everything, including—especially—aerial bombing of remote mountain villages! Isn't it about time we stopped being so damn destructive towards the very earth that sustains us?

Will the people who spent over a billion dollars within the past few weeks (and are likely to spend that much and much more over the coming months) to be swept away in a fantasy about the noble fight to stop evil human corporations from destroying incredible ecosystems on a distant imaginary planet wake up, take off those damn goggles, step outside, and look around at the very real planet we inhabit, and see what we are doing to it?

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Sunday, January 17, 2010

Astonishing image of a bird and the recent solar eclipse!

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On changing the world, one child at a time

Our 9-yr-old daughter Sanzari squealed in delight yesterday evening when she read on the TV schedule that one of her idols was going to be interviewed that night! Who might that be?

Why, Greg Mortenson, of course, author of Three Cups of Tea and the new Stones into Schools! Sanzari has been a fan every since we found the Young Readers edition of Three Cups of Tea, which she has since read several times! And this interview on Bill Moyers Journal last night only made her want to read the grown-up version of that book, as well as the new one.

Here's the interview:

via pbs.org

Afterwards, Sanzari asked why Obama was being so stupid and sending in more soldiers to Afghanistan when Mortenson was showing a different way to ending that war? Why indeed? Why can't we have a surge of Mortensons in that region, instead of more armed forces?

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Saturday, January 16, 2010

Flock of media vultures in Haiti...



Leave the poor woman alone, for FSM's sake!!

The commentary on this photo at dvafoto is well worth your while, especially if you are overwhelmed/jaded by the images flooding in amid the continuous media coverage of the tragedy in Haiti. Think about how our hunger for reportage may be adding to the misery of the people there...


Hat-tip: BAGnewsNotes

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Portrait of a rare avian beauty from north-east India


That's the Cachar Wedge-billed Wren Babbler, photographed in Nagaland recently by my (cyberspace only thus far) friend, and nature photographer extraordinaire, Ramki, who adds:
This was another coveted South Bramhaputra (roberti) species for us in Nagaland closely linked to its North Bramhaputra cousin (http://twurl.nl/2uxzio). Shashank and I saw a total of 7 birds in two locations (Konoma & Benrue). They were actually participating in mixed hunting flocks (of laughing thrushes and liocichlas), traveling in the undergrowth. Nagaland still has fabulous habitat left for the most fascinating of all NE skulkers -- the wren-babblers -- and we were very fortunate to see a few of them.
The roberti species has white scaling on the underparts compared to the Sikkim humei (found reliably in Eaglenest).
Some may wonder why I am getting so excited about a fairly drab looking bird in a not picture-perfect photo against a dark and noisy background. But the cognoscenti among you will know what a rare privilege it is to catch a glimpse of this quintessential skulker of the rainforest understory! I ran into a cousin of this, Sphenocichla humei, in Mehao Wildlife Sanctuary in Arunachal Pradesh almost 20 years ago - and the memory of that chance encounter in a dense bamboo thicket on the side of a steep and densely forested ridge still gives me goosebumps; I scarcely believe I actually saw it and its not my memory and desire playing tricks on me! For that species had not been reported in nearly half a century (mostly from lack of proper exploration, not the bird's fault!). And I, unfortunately, didn't have a good enough camera (nor was I fast enough on the draw) to get even a record shot. So I am thrilled to see a lovely portrait of a legendary skulker! How could I not share it with you? And I know there are probably a few clearer portraits of this bird - but this shot, with those blurry twigs trailing across the bird's profile, captures more of the essential experience of seeing this bird!!


If you still don't believe me, check out this YouTube video I just found, illustrating the more common experience with this bird - where its heard but scarcely seen (look around the 1:50 mark in the video):



And if you want to hear more, I even stumbled upon a collection of song recordings! Gotta love this couch-potato birding one can do via the internet these days!!

But ahh... how I miss the sheer exhilaration of actually stalking the birds skulking in that dark rainforest! I really must make more of an effort to get back to that part of the world again soon, eh?

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Friday, January 15, 2010

Snow Goose Festival in Chico, California


Sounds like a fun weekend up in the northern half of the Central Valley, if you want to head up there in a couple of weeks. And they say they're even greener this year! I wish I could go, but that would be the first full week of class this semester, and I really can't see taking off then! Perhaps a trip to a wetland closer by that also has snow geese and friends.

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Did the Pier 39 Sea Lions disappear because of 20th anniversary blues?


Perhaps they skipped town because they got wind of a party being thrown to mark the 20th anniversary of their taking over San Francisco's Pier 39. I imagine it could be depressing for these wonderful creatures of the open sea to realize that they've spent almost 20 years hanging out in an urban tourist trap! And not merely hang out, but actually become the bait in that tourist trap... yikes! Surely that's reason enough to hightail it out of there?!

All kidding aside, back on shore, someone over at the Marine Mammal Center has got to be wondering why on earth no one thought of tagging some of these beasts! You know, with one of them GPS transponder things so they could have kept track of them at times like these. Did no one ever think the animals might just take off some day, as abruptly as they had appeared?
Meanwhile, they had to postpone the anniversary party to a later date when, hopefully, the guests of honor will actually deign to be present! I sure hope they do return...

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Traversing a high road in a winter fog: Siskiyou pass and Mt Shasta through my windshield


I love to view the world through these winter morning fogs, perhaps next only to dusk (Sanzar), my favorite time of day. I love the way the soft light seems to drain all color out of the world... and how color seeps back in gradually as the sun burns off the fog. Odd, perhaps, for a primate evolved to rely upon color vision...

This was last Sunday, when we woke up in Medford, Oregon, and made our way back home to California's central valley. A foggy morning that gave us some spectacular views which I've tried to capture in these images - through the tiny lens on my iPhone perched atop the steering wheel, looking out through the windshield as I drove the lightly trafficked Interstate 5. If only we had time to stop and linger, soak in the fog and view the mountains up closer! Some day soon, I hope... meanwhile I hope you like these images.

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On Haiti's "Pact with the Devil"


via youtube.com

And that smackdown came in response, in case you didn't know, to the words of a well-known American Man of God, one who still has quite a following in the US! But who really is the devil who forced that pact (and others in its wake) onto Haiti? Here's a history lesson to provide more context.

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Haiti

When I think of Haiti, the image that comes to mind is of the view I saw from the air, flying over the island of Hispaniola en route between Puerto Rico and Miami in 2003. A striking feature of that island was a sharp demarcatation between a verdant, apparently forested eastern half and a barren dirt-brown western half. Upon glimpsing that demarcation, I first wondered if we were maybe flying over a national park boundary - for that's where I'm used to seeing such a stark constrast back in India. It turned out that I was looking at an international boundary - between the nations of the Dominican Republic (the green east) and Haiti (the brown west). Here's a satellite image of this boundary, courtesy of the NASA/Goddard Space Flight Center - Scientific Visualization Studio:


via cnas.org

Later, I heard Al Gore use a similar image to visually emphasize the connection between political systems and environmental problems. Last May, The Times had a story that provided historical context to Haiti: the land where children eat mud. Just a couple of months ago, the New York Times ran a series of articles (parts 1, 2, 3, 4, 5, and 6) on the troubled ecological legacy of a desperate human population living on the brink after decades of war and political strife. Here's a film about this, also from the NYT:


All that, before the earthquake struck this week! Its been difficult to watch scenes of the aftermath, being relayed on all media channels. Here's a more remote view, on Google's Haiti relief and imagery page which offers high resolution current imagery that might actually help relief efforts, as well as ways for you to donate to relief efforts.


via crunchgear.com

So the aid is coming in, quite generously, via governments, NGOs, and ordinary people texting in donations via SMS, and may it do all it can to alleviate the immediate suffering of Haiti's poor. But what of the longer term? How long is this helping hand from the rest of the world likely to linger, beyond the immediate crisis, beyong even the rebuilding of collapsed homes, to address the decades-long environmental tragedies of Haiti? What will it take to truly pull back this desperate nation not only from the current acute calamity of this earthquake, but from the chronic ecological catastrophe that is also Haiti's legacy? After all, rebuilding homes and cities may be hard and expensive, but its something we are good at when provided sufficient motivation like, say, from an earthquake. The business of rebuilding a tropical forest ecosystem after its been stripped so bare, on the other hand - of this, we know far less! Yet this ecological rebuilding, an undoing of human-made disasters, is what Haiti (like, indeed, many other parts of our planet) really needs if it is to regain any semblance of resilience in the face of such natural disasters.

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Thursday, January 14, 2010

Got a creationist in your face about evolution? There's an app for that!

If you ever argue with creationists, you know that the Index to Creationist Claims is an incredibly useful site, as is the book version, The Counter Creationism Handbook. Life just got a little sweeter: it is now available as a smartphone app for the blackberry and iPhone (just get into the App Store and search for 'creationist'). Well, sweeter for us; creationists will find themselves a little more readily refuted now.

Here's an iTunes link to the Creationist Claims Index app, which at 99 cents might just be the thing I should recommend to my students as I begin teaching Intro Bio (Bio 1B) next week. I just hope I don't have to keep turning to it myself too often. I also wonder if this might have helped last year when I had a creationist grad student in my very lab?! I do have and recommend the paperback version, but having it handy one a phone might have helped others in the lab who got into head-scratchingly odd conversations with that student.

Thanks PZ, and the creators of this app!

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Wishing I could be at this fun event this week... (#scio10)

Will try to catch it online instead, when I can, in between working on syllabi and getting labs organized for semester beginning next week. Do check out the website and associated wiki, for there are some cool things going on there, especially for those of us engaged in trying to do science and communicate science through various online avenues.

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So Human, So Chimp | The Human Spark | PBS Video

This is what had our girls riveted to the television last night - something about all the young 'uns (of various primate species) featured in this episode. What is it about young primates (human and non-human) that fascinates us so much?

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Wednesday, January 13, 2010

Seattle snapshots

Didn't really get to spend as much time as we would have liked exploring all that the Seattle area has to offer - what with the conference, winter weather, etc. - but we did manage to play tourist a little bit and I even got to snap a few pictures.

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Where the moon will cast a shadow in tomorrow's eclipse

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EclipseWatch: documenting animal behavior oddities during this week's solar eclipse

This Friday (Jan 15, 2010) some parts of the old world will experience a solar eclipse - even an annular one if you are in the right place! Now you may have heard stories of wild animals behaving strangely during eclipses, getting disoriented perhaps, showing unusual movement patterns, or just plain going nuts (heck, we humans probably behave most strangely of all!). A new citizen science project in India (parts of which will see the eclipse) seeks to document instances of such behavioral changes in animals through crowdsourcing! So if you happen to be in the path of the eclipse, and see something intriguing, go to EclipseWatch and share your observation! Here's the deal:


Have you wondered how animals and birds respond during a solar eclipse?

Here is a chance for you to contribute information based on your own observations during the solar eclipse on 15 January 2010! It’s very easy: just sign up using a simple form and map to indicate your intention to participate. Then download a data collection form (available on 14 Jan) with easy instructions, and fill it in with your observations.

EclipseWatch collects information about the flight of crows, kites, pigeons and bats; and the sounds of crows, sparrows, house lizards (geckoes) and dogs before, during, and after the eclipse. Please participate no matter where you are in the country, and no matter what the intensity of the eclipse will be in your area. The idea is to compare the reaction of animals across regions of different coverage of the eclipse.

Anyone can participate, so please join us in this unique India-wide effort to observe the natural world!

And if won't be in the eclipse's shadow, you can still help by spreading the word, so please retweet this / share it via Facebook / email anyone you know living in that region. It'll be cool to generate a good database of anecdotes from which interesting patterns may emerge!

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Hummingbirds: Magic in the Air (full video)

We didn't make it back to Fresno in time to watch this air last Sunday, on PBS' Nature. How wonderful that the entire video is available for viewing online! Enjoy the magic...

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Dreaded Bliss: when the formerly oppressed join forces to oppress someone else

How great a country is this where "people who had been discriminated against for their religion or the color of their skin can come together to discriminate against people for their sexual orientation"?! Ah human nature! And thank FSM for the Daily Show which keeps finding rich nuggets of irony in an irony-free culture. I wonder if that woman at the end actually watched herself in this clip - and what she thought afterwards...

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Saturday, January 9, 2010

Fast food waste management, a la Burgerville

What every restaurant should (be required to) have!

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Thursday, January 7, 2010

Making sense of celebrities' science claims in 2009

An excellent resource to counter some of the celebrity nonsense that filled the airwaves in 2009. The focus, understandable given the source, is on British celebrities, but the content is good. Is there an American version? How about one in India?

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Becoming Us | The Human Spark | PBS Video

And lo - PBS does have it available online (and posterous is nifty again in sucking up the embed code via bookmarklet). Enjoy!

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Residential irrigation as a driver of urban biodiversity (my SICB talk)

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Alan Alda searches for the Human Spark on PBS, and does it rivetingly

Just watched the first episode, Becoming Us, of this new PBS series tonight (after skipping out on SICB social events as I was too tired after a long day at talks). Even our 9-yr-old (and 4-yr-old - for the most part) was absorbed. Quite an edutaining episode, which I hope PBS shares in full via their website like they do their NOVA shows. If so, I'll share them here. Meanwhile, enjoy these excerpts - and visit the show's website for a lot more information and discussion.

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Tuesday, January 5, 2010

Hummingbirds: Magic in the Air - this Sunday on Nature (PBS)

Now this looks like something worth setting up your DVR to record this sunday: PBS Nature's upcoming episode (premiering Sunday, Jan 10, 2010) on Hummingbirds. Here are a few excerpts of stunning footage that'll wow you:



Hummingbird babies:



Incredible agility - featuring biologist Doug Altshuler (whom we tried to hire in our department at Fresno State a few years ago... when we were still able to hire anyone at all!):



Expert hunters:


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Monday, January 4, 2010

That dreaded phone call... and a call for a helping hand

There is a phone call that we all dread, those of us in the globalized diaspora who are flung far from home and family. It always comes bearing a numbing shock, even if we've been living in dread of it. I got one such call four years ago, knocking the wind out of me as it was completely unanticipated, when I lost my father. My wife jumps at the phone if it rings at odd hours ever since her mother's health started declining. Our friend Mark Boyd, president of the Central Valley Alliance of Atheists and Skeptics, received such a call yesterday when he lost is wife, Won Chong Boyd, who was on a long-awaited trip back home to Korea. She was the same age as my older sister - far too young to die, at 46, even if she had been ill for some time. I can only imagine his shock and grief as he prepares hastily to journey to Korea himself to take care of her one last time. Along with the emotional terror of such a phone call comes an added financial shock for many of us as we also have to deal with the mundane but substantial costs of last-minute airfares and other practical matters. Mark and Won were already stretched from having scraped together the airfare for the latter's trip back home, long delayed due to her ill-health - so he is hurting financially as well. But that at least is a practical thing we can help him with, even as we may find it hard to imagine the emotional shock of losing a life partner at a young age; to lose them from half a world away after one's been nursing them through ill-health for years! In his immediate grief, Mark speaks of the turmoil his wife and he overcame over his loss of religious faith - and this is just the kind of time when faith offers an institutionalized community to share the burden of grief. Us godless individuals have only each other to rely on, so I hope you too can lend a hand to help a fellow human being at his time of need. I know fellow CVAAS members are already rallying around - but thought I should spread the word in case you are also able to help - please visit his blog for how.

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Carnival of Evolution #19 is up...

...at Observations of a Nerd, who kicks off the new year thus:


Well, it's 2010, and it's time for another edition of the Carnival of Evolution! Without further ado...

Go check it out!

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Café Scientifique tonight: Epidemiology of Lung Cancer in the Central Valley

Each year 160,000 Americans die from lung cancer and another 220,000 are diagnosed with the disease. About 85-90% of lung cancer is attributable to cigarette smoking and other tobacco related exposures; however, one in five American adults continue to smoke. Although there has been a decline in smoking during the last several decades, recent national data suggest the decline has leveled off, especially among young adults. In this presentation, the worldwide distribution of lung cancer, state and local patterns of lung cancer will be presented, as well as data on smoking habits and other risk factors for this deadly disease.

For those of you in Fresno tonight - a reminder: the above is the topic for tonight's talk at the Central Valley Café Scientifique by Dr. Paul Mills of the UCSF-Fresno Medical Education Program. And note that we meet at a new venue tonight. Enjoy - even if some of us regulars have to miss it!

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Residential water management as a driver of urban biodiversity

67.11  Wednesday, Jan. 6  Resilience in urban socioecological systems: residential water management as a driver of biodiversity KATTI, M*; SCHLEDER, B; California State Univ, Fresno; California State Univ, Fresno mkatti@csufresno.edu

Cities are unique ecosystems where human social-economic-cultural activities prominently shape the landscape, influencing the distribution and abundance of other species, and consequent patterns of biodiversity. The long-term sustainability of cities is of increasing concern as they continue to grow, straining infrastructure and pushing against natural resources constraints. A key resource is water, esp. in the more rapidly urbanizing arid regions. Understanding water management is thus critical for a deeper theoretical understanding of urban ecosystems and for effective urban policy. Landscaping and irrigation at any urban residence is a product of local geophysical/ecological conditions, homeowners’ cultural preferences, socioeconomic status, neighborhood dynamics, zoning laws, and city/state/federal regulations. Since landscape structure and water availability are key determinants of habitat for other species, urban biodiversity is strongly driven by the outcome of interactions between these variables. Yet the relative importance of ecological variables vs human socioeconomic variables in driving urban biodiversity remains poorly understood. Here we analyze data from the Fresno Bird Count, a citizen science project in California’s Central Valley, to show that spatial variation in bird diversity is best explained by a multivariate model including significant negative correlations with % building and grass cover, and positive correlations with interactions between irrigation intensity, median family income, and grass height. We discuss implications of our findings for urban water management policies in general, and for Fresno’s planned switch to metering water use in 2013. Ecological theory, conservation, and urban policy all benefit if we recognize cities as coupled socioecological systems.

If you're in Seattle - at the ongoing SICB meeting even - at 11:40 AM on Wednesday this week, and need some mental stimulation before lunch, why not join the throng at the above talk?

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Education for the future and the future of education

I'm preparing for what ay be the biggest teaching challenge of my hitherto untenured professorial career: Biology 1B, or Intro Bio (the diversity and evolution edition), the large lower division undergraduate course which (for pre-meds and other non-bio-majors) may be the only time that many of the students encounter the diversity of life on this planet and the mechanism that produced that diversity - Evolution. Teaching evolution in the San Joaquin Valley of California is a challenge, as I have noted before, but I've only done so at the other end of our majors' core sequence - the upper division Evolution class. Students taking that class have, by that time, generally come to terms with evolution, or at least become good at hiding their trouble with it (and don't ask me which I prefer!). I will now experience what its like to teach the E-subject at the lower division level, especially for many students who won't be taking the course to get a biology degree. Should be fun, eh?

Should I tone it down, perhaps even skirt around the E-word as some in this region suggest, to avoid creating conflicts for some students that may impair their learning? Or should I hammer it in, so that those who object to it are "weeded out" to alternative career choices - and perhaps turned more hostile towards evolution? How about, instead, I try to really light a fire of curiosity in their minds so that more of them actually want to learn evolutionary biology in all its glory? Ah... that last is the ideal I'd like to shoot for, but am also most apprehensive about being able to pull off without falling into the second category: appearing to be hammering it in too strongly! But surely, I have to try to excite them about evolution, don't I? For these students are the future pillars of this state and country, so isn't it my duty as a science professor to make sure they get a proper understanding of and appreciation for science, even if - especially if - it pushes them outside their cultural comfort zones and forces them to acknowledge and push beyond the boundaries of their ignorance? More selfishly - some of these kids will become doctors who may treat me in my old age, while others will sit on school boards that determine what my daughters can learn - or not - in their classroom! How can I forgo my one chance of making sure they have the right scientific foundation?

These would be questions keeping me up even ordinarily, but this year they hold a sharper edge, owing to our current circumstances: Caifornia's higher education system is in crisis along with the state's economy, putting a college degree farther out of reach for many; I teach in the California State University system, which is the worst affected among the triumvirate leading the state's higher education; our campus serves one of the poorest regions in the state (perhaps the country) with a high proportion of "minority" students; and I'm told that bad economic times can make people more cautious and conservative - even fundamentalist if you ask at least one evolutionary biologist who recently argued that the ecologically sound way to address the problem of terrorism is to increase existential security for people (I don't buy that - but will defer that argument to another post to avoid a lengthy detour here). Giving students a sound foundation in science - including evolution - therefore becomes more important than ever if we are to collectively pull ourselves up by our bootstraps.

This Sunday's Los Angeles Times had a couple of thought-provoking articles that are pertinent to this discussion and well worth your while, especially if you live in California. First, Professor William Tierney, director of the Center for Higher Education Policy Analysis at the University of Southern California, calls for a brand new master plan for higher education in California since the old master plan (which put the triad of UC-CSU-Community Colleges in charge of public higher education) is outdated and probably past its use-by date. Many points worth thinking about in the article, but one that particularly resonates with me right now is this:

* High school and higher education must be linked to ensure that when students graduate from high school, they are prepared for college.

Tens of millions of dollars are spent each year bringing more than 50% of Cal State students up to speed in math and English, with often negligible results. That kind of waste could be significantly reduced if high schools and colleges agree on what entering freshmen should know and then work together to bring it about. That means, at a minimum, requiring four years of English and three years of math, including algebra.

High schoolers also should be tested to prove they can do college-level work -- not simply to meet high school requirements. If they can't, corrective steps should be taken in high school to overcome their deficiencies. This demands collaborative relationships between high schools and colleges that don't exist now.

This seems like such a no-brainer to me that I'm surprised its been overlooked thus far. So much of what we find ourselves doing in university these days is remedial education that its not funny! My life would be so much easier if the K-12 system didn't just kick the problem upstairs and "graduate" students lacking in basic skills, especially in critical thinking and other fundamentals of science - not just math and English! How much farther would I be able to take these kids if they only came better prepared... oh I can dream!

Second, Dr. Irving Epstein, HHMI Professor of Chemistry at Brandeis University raises broader questions about the science of science education:

At most universities, freshman chemistry, a class I've taught for nearly 40 years, is the first course students take on the road to a career in the health professions or the biological or physical sciences. It's a tough course, and for many students it's the obstacle that keeps them from majoring in science. This is particularly true for minority students.

My intro bio course is another such obstacle, made acute by the "majority minority" nature of our student body.

In 2005, more than two-thirds of the American scientific workforce was composed of white males. But by 2050, white males will make up less than one-fourth of the population. If the pipeline fails to produce qualified nonwhite scientists, we will, in effect, be competing against the rest of the world with one hand tied behind our backs.

We've been able to survive for the last several decades in large measure because of the "brain drain" -- the fact that the most able students from other countries, particularly China and India, have come here to study science at our best universities and, in many cases, have stayed to become key players in our scientific endeavors.

At many top schools, including my own, international students constitute from 30% to 70% of the doctoral candidates in math, physics and chemistry.

This resonates too, for I am an exemplar of this very "brain drain": a non-white immigrant from India who came to this country for graduate school because I was starving for evolutionary biology back in India!

The situation might be tolerable, if embarrassing, were it not for recent changes in world economies and attitudes toward science and education. As a result of dramatically increased investment by other countries in science, the brain drain is not just slowing, it appears to be changing direction.

International students and post-docs are returning to their home countries in much greater numbers after reaping the benefits of an American education, and many who have worked for years at U.S. companies and universities are being lured home by offers of new labs, easy access to research funding and the comforts of their native culture.

And this last part hits even closer to home, as I too experience greater pressure these days to return home to new institutions of higher learning in India. Many colleagues there (and my own spouse here) wonder (aloud) why I have chosen to remain at an institution such as this one where I teach more classes each semester than they have to during a whole year (or two), where research is a "required hobby" that I have to constantly scrape up time for, and where the student body is such a problematic one. How much longer can I stave off these questions and fight the tide of the reverse brain drain? Interesting to be pondering this even as my tenure file makes its way up my university's hierarchy this year, giving me that shot at existential security: what price such personal existential security against an increasingly insecure future? I guess the answer for me will depend on how California handles this crisis (no good omens thus far) - but in the meantime, I still have to address this challenge: 

We need to ensure that American science draws on all of our population, not just selected, and shrinking, segments of it. But how?

Read the rest of Epstein's article, and Abel Pharmboy's commentary on the same at ScienceBlogs for some potential answers. And if you have a better solution, please do share, won't you? Meanwhile, I better get back to writing that syllabus, and preparing my talk for the SICB meeting which just got underway tonight!

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A blog about studying and applying evolutionary ecology in human-dominated landscapes from the Reconciliation Ecology Lab at California State University, Fresno

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